scRNAseq Regeneration Database
» scRNAseq Regeneration Database is a in-house database for the regeneration communtity.
It is a collection of scRNA-seq/scATAC-seq/scMultiomics data of injured tissues.
Basic and Advanced boostcamp
» Bioinformatics Basics/Advanced boostcamp: Sequence Analysis Bootcamp
This is a series of lectures on Unix, cluster computing, R language and bioinformatics tools for molecular biologist. The main goal is to introduce the audience to the basics of bioinformatics with a focus on deep sequencing data analysis using a mixed data of RNA-seq and ChIP-seq as an example. Basic computer skills are required to follow the lectures. No programming skills are required. The boost camp stats with a quick introduction to how to read the analysis results. Next, genomic file formats will be introduced. Then the analysis of RNA-seq and ChIP-seq will be demonstrated. This is followed by the visualizing and downstream analyzing of the data. The last part of this boost camp is a brief introduction to R programming language.
Shiny Apps
» A collection of shiny apps
Various tools are available, including scatter plots, heatmaps, and homolog analysis.